Problem about DCM phase alignment

according to datasheet, the CLKIN( labled '3') and CLKFB ( labled '6') 
are aligned, namely the phase of 3 and 6 should be the same, or we say 5 
and 3 should be the same as 5 and 6 are on the same wire.
then in my post-route simulation in ISIM, the clock is 375MHz, and it's 
in Xilinx Vertex 4 FPGA.  I use above mode, the phase  of 3 and 6 are 
the same, but 5 and 3 are quite different.  Also, the phase between 2 
and 3 are different. What's wrong with it? Is it a route delay?. in fact 
they are on the same line. if it's a route delay, is that possible that 
huge?