Olimex p2106 blink!

Hey guys ....
in order to compile my works using arm gcc gnu
everything has to be done in windows terminals..
do you guys mind
listing me all the valuable arm gnu commands i require to compile
my projects and link, makefile etc etc to attain a hex file from my arm 
projects ?
and i also have another problem... after compiling a sample project 
using eclipse cpp... out of curiosity i flashed my arm with the BSL 
(boot-strap-loader) shorted and not for some reason the bootloader is in 
control of the MCU and wont let me flash to it again..
does anybody know how i force my board out of bootloaders control ?

Flash Utility detects the board but cannot communicate with it