Hello,

I have an AT91SAM3U-EK and the SAM-ICE JTAG programmer. I am using 
YAGARTO along with the sample project I have attached. This is the 
tutorial I am following

http://yagarto.de/howto/jlink/index.html

I am slightly confused about the programming procedure and how it works.

This is the GDB script that is included with the example project

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#

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# This config file was tested with J-Link GDB Server v4.10i

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#

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# connect to the J-Link gdb server

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target remote localhost:2331

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# Set gdb server to little endian

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monitor endian little

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# Set JTAG speed to 5 kHz

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monitor speed 5

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# Reset the target

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monitor reset

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monitor sleep 100

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# Set JTAG speed in khz

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monitor speed auto

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# Vector table placed in RAM

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monitor writeu32 0xE000ED08 = 0x20000000

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load

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monitor reg r13 = (0x20000000)

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monitor reg pc = (0x20000004)

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break ResetException

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break main

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continue

Rather than asking "what does this do" I would like to know where I need 
to look to figure it out my self. I had to install the J-Link server 
software along with all of the YAGARTO tools so I am not sure what 
exactly is going on when I follow the directions, or what tools are 
being used to do the programming, so I am not sure what documentation I 
need to dig into. If anyone can tell me exactly what is going on here, 
or point me to some good resources I would really appreciate it. I want 
to be able to write my own GDB scripts and extend these techniques as 
much as possible.